• Metagenomic analysis of the viral flora of pine marten and European badger feces. van den Brand JM, van Leeuwen M, Schapendonk CM, Simon JH, Haagmans BL, Osterhaus AD, Smits SL. (2011) J Virology ePub.
• Systematic comparison of three methods for fragmentation of long-range PCR products for next generation sequencing. Knierim E, Lucke B, Schwarz JM, Schuelke M, Seelow D. (2011) PLoS One 6(11): e28240.
• High-throughput sequencing of PCR products tagged with universal primers using 454 life sciences systems. Daigle D, Simen BB, Pochart P. (2011) Current Protocols Mol Biol Chapter 7: Unit 7.5.
• DNA-Based Faecal Dietary Analysis: A Comparison of qPCR and High Throughput Sequencing Approaches. Murray DC, Bunce M, Cannell BL, Oliver R, Houston J, White NE, Barrero RA, Bellgard MI, Haile J. (2011) PLoS One 6(10): e25776.
• Distinctive Phyllosphere Bacterial Communities in Tropical Trees. Kim M, Singh D, Lai-Hoe A, Go R, Abdul Rahim R, A N A, Chun J, Adams JM.  (2011) Microbial Ecology ePub:
• Peptide fingerprinting of the neurotoxic fractions isolated from the secretions of sea anemones Stichodactyla helianthus and Bunodosoma granulifera. New members of the APETx-like family identified by a 454 pyrosequencing approach. Rodríguez AA, Cassoli JS, Sa F, Dong ZQ, de Freitas JC, Pimenta AM, de Lima ME, Konno K, Lee SM, Garateix A, Zaharenko AJ. (2011) Peptides ePub:
• Pyrosequencing Reveals Restricted Patterns of CD8+ T Cell Escape-Associated Compensatory Mutations in SIV. Burwitz BJ, Sacha JB, Reed JS, Newman LP, Norante FA, Bimber BN, Wilson NA, Watkins DI, O'Connor DH. (2011) J Virology ePub:
• Conditional CD8+ T cell escape during acute simian immunodeficiency virus infection. O'Connor SL, Becker EA, Weinfurter JT, Chin EN, Budde ML, Gostick E, Correll M, Gleicher M, Hughes AL, Price DA, Friedrich TC, O'Connor DH. (2011) J Virology ePub:
• Microbial biogeography of public restroom surfaces. Flores GE, Bates ST, Knights D, Lauber CL, Stombaugh J, Knight R, Fierer N. (2011) PLoS One 6(11): e28132.
• Rapid and Efficient Human Mutation Detection Using a Bench-Top Next-Generation DNA Sequencer. Jiang Q, Turner T, Sosa MX, Rakha A, Arnold S, Chakravarti A. (2011) Human Mutations ePub.
• Epitope-Specific Human Influenza Antibody Repertoires Diversify by B Cell Intraclonal Sequence Divergence and Interclonal Convergence. Krause JC, Tsibane T, Tumpey TM, Huffman CJ, Briney BS, Smith SA, Basler CF, Crowe JE Jr. (2011) J Immunology ePub.
• Differential MHC class I expression in distinct leukocyte subsets. Greene JM, Wiseman RW, Lank SM, Bimber BN, Karl JA, Burwitz BJ, Lhost JJ, Hawkins OE, Kunstman KJ, Broman KW, Wolinsky SM, Hildebrand WH, O'Connor DH. (2011) BMC Immunology 12(1): 39.
• Minor HIV-1 Variants with the K103N Resistance Mutation during Intermittent Efavirenz-Containing Antiretroviral Therapy and Virological Failure. Delobel P, Saliou A, Nicot F, Dubois M,Trancart S, Tangre P, Aboulker JP, Taburet AM, Molina JM, Massip P, Marchou B, Izopet J; ANRS 106-Window Study Team. (2011) PLoS One 6(6):e21655.
• The role of MHC class I allele Mamu-A*07 during SIV(mac)239 infection. Reed JS, Sidney J, Piaskowski SM, Glidden CE, León EJ, Burwitz BJ, Kolar HL, Eernisse CM, Furlott JR, Maness NJ, Walsh AD, Rudersdorf RA, Bardet W, McMurtrey CP, O'Connor DH, Hildebrand WH, Sette A, Watkins DI, Wilson NA. (2011) Immunogenetics ePub.
• Second generation sequencing allows for mtDNA mixture deconvolution and high resolution detection of heteroplasmy. Holland MM, McQuillan MR, O'Hanlon KA. (2011) Croat Med J 15;52(3):299-313.
• Novel, divergent simian hemorrhagic Fever viruses in a wild ugandan red colobus monkey discovered using direct pyrosequencing. Lauck M, Hyeroba D, Tumukunde A, Weny G, Lank SM, Chapman CA, O'Connor DH, Friedrich TC, Goldberg TL. (2011) PLoS One 6(4): e19056.
• Hypervirulent Chlamydia trachomatis Clinical Strain Is a Recombinant between Lymphogranuloma Venereum (L2) and D Lineages. Lauck M, Hyeroba D, Tumukunde A, Weny G, Lank SM, Chapman CA, O'Connor DH, Friedrich TC, Goldberg TL. (2011) PLoS One 6(4): e19056.
• Concordance Between Two Phenotypic Assays and Ultra Deep Pyrosequencing for Determining HIV-1 Tropism. Saliou A, Delobel P, Dubois M, Nicot F, Raymond S, Calvez V, Masquelier B, Izopet J; the ANRS AC11 Resistance Study Group. (2011) Antimicrob Agents Chemother ePub:
• Genome sequence of an Erwinia amylovora strain with pathogenicity restricted to Rubus plants. Powney R, Smits TH, Sawbridge T, Frey B, Blom J, Frey JE, Plummer KM, Beer SV, Luck J, Duffy B, Rodoni B. (2011) J Bacteriology 193(3): 785-6.
• Transcriptionally Abundant Major Histocompatibility Complex Class I Alleles are Fundamental to Non-Human Primate SIV-specific CD8+ T Cell Responses. Budde ML, Lhost JJ, Burwitz BJ, Becker EA, Burns CM, O'Connor SL, Karl JA, Wiseman RW, Bimber BN, Zhang GL, Hildebrand W, Brusic V, O'Connor DH. (2011) J Virology 85(7):3250-61.
• A novel single cDNA amplicon pyrosequencing method for high-throughput, cost-effective sequence-based HLA class I genotyping. Lank SM, Wiseman RW, Dudley DM, O'Connor DH. (2010) Human Immunology 71(10): 1011-7.
• Characterization of Mauritian cynomolgus macaque major histocompatibility complex class I haplotypes by high-resolution pyrosequencing. Budde ML, Wiseman RW, Karl JA, Hanczaruk B, Simen BB, O'Connor DH. (2010) Immunogenetics 62(11-12): 773-80.

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The Genome Sequencer FLX System, the big brother to the GS Junior System, has enabled hundreds of peer-reviewed publications in top tier scientific journals.
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